Michael Dhar’s Bioinformatics Projects

NGSRelate and PCAngSD NF Script 5-23Download
Documentation GATK Variant Calling Workflow 4-24-23Download
GATK NextFlow Pipeline
Download
Miscellaneous Perl-Python Scripts Posted 10-22-23Download
Various-BASH-Scripts_12-27-23Various BASH and Perl Scripts
Circlize genome features graphing project.Download
Circlize R ScriptDownload

Date Palm Genome Hub website [link]

Prugganan Lab team site (bio) [link]

Publication (contributing author, bioinformatician): “Genome-wide association of date palm fruit traits.” Hazzouri KM et al. 2019. Nature Communications. 10: 4680. [link]

Transcriptomics RNA-Seq project final report [PDF]Download
Date Palm RNA-Seq pipeline scripts [PDF]Download

Big Data bioinformatics project [GitHub link]

Guided Study RNA-Seq pipeline analysis project [PDF]Download
Guided Study RNA-Seq pipeline READMEDownload

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